• Amerodothis ilicis (Cooke) Theiss. & Syd., 1915 accepted as Botryosphaeria obtusa (Schwein.) Shoemaker, 1964
• Auerswaldiella puccinioides (Speg.) Theiss. & Syd., 1914
• Auerswaldiella winteri Arx & E. Müll., 1954
• Botryosphaeria abietina (Prill. & Delacr.) Maubl., 1907
• Botryosphaeria acaciae (Hansf.) Dingley, 1970
• Botryosphaeria advena Ces. & De Not. accepted as Botryosphaeria quercuum (Schwein.) Sacc., 1882
• Botryosphaeria aesculi (Peck) M.E. Barr, 1972 accepted as Guignardia aesculi (Peck) V.B. Stewart, 1916
• Botryosphaeria ambigua (Schwein.) Sacc., 1882 accepted as Botryosphaeria obtusa (Schwein.) Shoemaker, 1964
• Botryosphaeria anthuriicola Massee, 1899 accepted as Phyllachora phylloplaca (Mont.) Sacc., 1883
• Botryosphaeria banksiae Hansf., 1954 accepted as Coccodiella banksiae (Hansf.) H.J. Swart, 1988
• Botryosphaeria berengeriana De Not., 1863 accepted as Botryosphaeria ribis Grossenb. & Duggar, 1911
• Botryosphaeria bidwellii (Ellis) Petr., 1958 accepted as Guignardia bidwellii (Ellis) Viala & Ravaz, 1892
• Botryosphaeria castaneae (Schwein.) Sacc. accepted as Cryptodiaporthe castanea (Tul. & C. Tul.) Wehm., 1933
• Botryosphaeria cocoicola (Sivan.) K.D. Hyde & P.F. Cannon, 1999
• Botryosphaeria corticis (Demaree & Wilcox) Arx & E. Müll., 1954
• Botryosphaeria cyanogena (Desm.) Niessl accepted as Gibberella cyanogena (Desm.) Sacc., 1883
• Botryosphaeria dasylirii (Peck) Theiss. & Syd., 1915 accepted as Botryosphaeria quercuum (Schwein.) Sacc., 1882
• Botryosphaeria decipiens (DC.) Cooke accepted as Anthostoma decipiens (DC.) Nitschke, 1867
• Botryosphaeria dothidea (Moug.) Ces. & De Not., 1863
• Botryosphaeria empetri (Rostr.) Arx & E. Müll., 1954 accepted as Physalospora empetri Rostr., 1901
• Botryosphaeria euomphala (Berk. & M.A. Curtis) Sacc. accepted as Nitschkia confertula (Schwein.) Nannf., 1975
• Botryosphaeria ferruginea (Fuckel) Sacc., 1882 accepted as Azbukinia ferruginea (Fuckel) Lar.N. Vassiljeva, 1989
• Botryosphaeria festucae (Lib.) Arx & E. Müll., 1954
• Botryosphaeria foliorum (Sacc.) Arx & E. Müll., 1954 accepted as Guignardia philoprina (Berk. & M.A. Curtis) Aa, 1973
• Botryosphaeria gregaria sensu Johnson (1904) accepted as Glomerella cingulata (Stoneman) Spauld. & H. Schrenk, 1903
• Botryosphaeria hoffmannii Höhn., 1904 accepted as Botryosphaeria quercuum (Schwein.) Sacc., 1882
• Botryosphaeria hyperborea M.E. Barr, 1970
• Botryosphaeria istriaca (Bubák) Petr., 1963 accepted as Guignardia istriaca Bubák, 1916
• Botryosphaeria melanops (Tul.) G. Winter, 1887 accepted as Botryosphaeria quercuum (Schwein.) Sacc., 1882
• Botryosphaeria miconiae (Duby) Höhn., 1909 accepted as Coccodiella miconiae (Duby) I. Hino & Katum., 1968
• Botryosphaeria morbosa (Schwein.) Sorauer, 1921 accepted as Apiosporina morbosa (Schwein.) Arx, 1954
• Botryosphaeria moricola Ces. & De Not. accepted as Gibberella baccata (Wallr.) Sacc., 1878
• Botryosphaeria obtusa (Schwein.) Shoemaker, 1964
• Botryosphaeria palmigena (Berk. & M.A. Curtis) E. Bommer & M. Rousseau, 1896 accepted as Coccostromopsis diplothemii (Rehm) K.D. Hyde & P.F. Cannon, 1999
• Botryosphaeria philoprina (Berk. & M.A. Curtis) Arx & E. Müll., 1954 accepted as Guignardia philoprina (Berk. & M.A. Curtis) Aa, 1973
• Botryosphaeria praestans (Lév.) Sacc., 1882 accepted as Bagnisiopsis praestans (Lév.) Theiss. & Syd., 1915
• Botryosphaeria proteae (Wakef.) Denman & Crous, 1999 accepted as Phyllachora proteae Wakef., 1922
• Botryosphaeria pseudotsugae A. Funk, 1975
• Botryosphaeria pulicaris (Fr.) Ces. & De Not. accepted as Gibberella pulicaris (Fr.) Sacc., 1877
• Botryosphaeria quercuum (Schwein.) Sacc., 1882
• Botryosphaeria rhodina (Berk. & M.A. Curtis) Arx, 1970
• Botryosphaeria rhodorae (Cooke) M.E. Barr, 1970 accepted as Guignardia philoprina (Berk. & M.A. Curtis) Aa, 1973
• Botryosphaeria ribis Grossenb. & Duggar, 1911
• Botryosphaeria saubinetii (Mont.) Niessl accepted as Gibberella zeae (Schwein.) Petch, 1936
• Botryosphaeria stevensii Shoemaker, 1964
• Botryosphaeria subglobosa (C. Booth) Arx & E. Müll., 1975
• Botryosphaeria sumachi (Schwein.) Cooke accepted as Sphaeropsis sumachi (Schwein.) Cooke & Ellis, 1876
• Botryosphaeria trames (Berk. & M.A. Curtis) Sacc., 1882 accepted as Lasiosphaeria trames (Berk. & M.A. Curtis) Cooke
• Botryosphaeria tsugae A. Funk, 1964
• Botryosphaeria vaccinii (Shear) M.E. Barr, 1970 accepted as Guignardia vaccinii Shear, 1907
• Botryosphaerostroma hypodermia (Sacc.) Petr. accepted as Botryodiplodia hypodermia (Sacc.) Petr., 1923
• Botryosphaerostroma visci (Sollm.) Petr., 1926 accepted as Sphaeropsis visci (Alb. & Schwein.) Sacc., 1880
• Carlia angelicae (Fr.) Höhn., 1923 accepted as Phyllachora angelicae (Fr.) Fuckel, 1870
• Carlia aspidii Höhn. accepted as Mycosphaerella aspidii (Höhn.) L. Holm & K. Holm, 1979
• Carlia bidwellii (Ellis) Prunet, 1989 accepted as Guignardia bidwellii (Ellis) Viala & Ravaz, 1892
• Carlia conglomerata (Wallr.) Höhn., 1923 accepted as Mycosphaerella conglomerata (Wallr.) Lindau, 1897
• Carlia crataegi (Fuckel) Höhn., 1920 accepted as Mycosphaerella crataegi (Fuckel) Johanson ex Oudem., 1897
• Carlia hederaecola (Desm.) Höhn., 1925 accepted as Mycosphaerella hedericola (Desm.) Lindau, 1897
• Carlia heraclei (Fr.) Höhn., 1930 accepted as Phyllachora heraclei (Fr.) Fuckel, 1870
• Carlia ilicis Jacz., 1896 accepted as Guignardia philoprina (Berk. & M.A. Curtis) Aa, 1973
• Carlia latebrosa (Cooke) Höhn., 1920 accepted as Mycosphaerella latebrosa (Cooke) J. Schröt., 1894
• Carlia lineolata (Roberge ex Desm.) Höhn., 1925 accepted as Mycosphaerella lineolata (Roberge ex Desm.) J. Schröt., 1894
• Carlia millepunctata (Desm.) Kuntze, 1891 accepted as Mycosphaerella millepunctata (Desm.) M.E. Barr, 1970
• Carlia morthieri (Fuckel) Höhn., 1930 accepted as Phyllachora morthieri (Fuckel) Fuckel, 1870
• Carlia oxyacanthae (Jaap) Höhn., 1920 accepted as Mycosphaerella oxyacanthae Jaap
• Carlia podagrariae (Roth) Höhn., 1923 accepted as Phyllachora podagrariae (Roth) P. Karst., 1873
• Carlia recutita (Fr.) Höhn., 1923 accepted as Mycosphaerella recutita (Fr.) Johanson, 1884
• Carlia rhytismoides (Fr.) Kuntze, 1891 accepted as Isothea rhytismoides Fr., 1849
• Carlia sagedioides (G. Winter) Höhn., 1930 accepted as Mycosphaerella sagedioides (G. Winter ex Sacc.) Lindau, 1897
• Carlia tulasnei (Jancz.) Höhn., 1930 accepted as Mycosphaerella tassiana (De Not.) Johanson, 1884
• Caumadothis dothidea (Moug.) Petr., 1971 accepted as Botryosphaeria dothidea (Moug.) Ces. & De Not., 1863
• Cryptosphaeria aurantia Grev. accepted as Hypomyces ochraceus (Pers.) Tul. & C. Tul., 1865
• Cryptosphaeria corniculata (Ehrh.) Grev. accepted as Peroneutypa corniculata (Ehrh.) Berl., 1902
• Cryptosphaeria corniculata sensu Greville accepted as Diaporthe eres Nitschke, 1870
• Cryptosphaeria crepiniana Sacc. & Roum., 1883 accepted as Eutypa lata (Pers.) Tul. & C. Tul., 1863
• Cryptosphaeria decipiens (Lam. & DC.) Laessøe & Spooner, 1994 accepted as Anthostoma decipiens (DC.) Nitschke, 1867
• Cryptosphaeria doliolum (Pers.) Grev. accepted as Leptosphaeria doliolum (Pers.) Ces. & De Not., 1863
• Cryptosphaeria eunomia (Fr.) Fuckel, 1870
• Cryptosphaeria eunomica (Fr.) Fuckel accepted as Cryptosphaeria eunomia (Fr.) Fuckel, 1870
• Cryptosphaeria eunomioides (G.H. Otth) Höhn., 1923 accepted as Cryptosphaeria eunomia (Fr.) Fuckel, 1870
• Cryptosphaeria glaucopunctata Grev. accepted as Phaeosphaeriopsis glaucopunctata (Grev.) M.P.S. Câmara, M.E. Palm & A.W. Ramaley, 2003
• Cryptosphaeria gnomon (Tode) Grev. accepted as Gnomonia gnomon (Tode) J. Schröt., 1897
• Cryptosphaeria ligniota (Fr.) Auersw., 1874
• Cryptosphaeria millepunctata Grev., 1826 accepted as Cryptosphaeria eunomia (Fr.) Fuckel, 1870
• Cryptosphaeria moravica Petr. & Sacc., 1913
• Cryptosphaeria myriocarpa (Nitschke) Sacc., 1882 accepted as Eutypa lata (Pers.) Tul. & C. Tul., 1863
• Cryptosphaeria nitida Grev. accepted as Coleroa robertiani (Fr.) E. Müll., 1962
• Cryptosphaeria ocellata (Fr.) Ces. & De Not., 1863
• Cryptosphaeria populina (Pers.) Sacc., 1882 accepted as Cryptosphaeria ligniota (Fr.) Auersw., 1874
• Cryptosphaeria pulchellum (Pers.) Grev. accepted as Calosphaeria pulchella (Pers.) J. Schröt., 1897
• Cryptosphaeria punctiformis (Pers.) Grev. accepted as Mycosphaerella punctiformis (Pers.) Starbäck, 1889
• Cryptosphaeria subcutanea (Wahlenb.) Rappaz, 1984
• Cryptosphaeria tamaricis (Grev.) Grev. accepted as Leptosphaeria tamaricis (Grev.) Sacc., 1883
• Cryptosporina hypodermia (Fr.) Höhn. accepted as Cryptosporella hypodermia (Fr.) Sacc., 1877
• Dichomera aequivoca Pass., 1884 accepted as Camarosporium aequivocum (Pass.) Sacc., 1884
• Dichomera eucalypti (G. Winter) B. Sutton, 1975 accepted as Camarosporium eucalypti G. Winter, 1886
• Dichomera gemmicola A. Funk & B. Sutton, 1972
• Dichomera mutabilis (Berk. & Broome) Sacc., 1884
• Dichomera rhamnicola (Cooke) B. Sutton & Dyko, 1989
• Dichomera salicina (Vize) Sacc., 1884 accepted as Camarosporium salicinum (Vize) Grove, 1937