• Paraphysomonas acantholepis H.R. Preisig & D.J. Hibberd, 1982
• Paraphysomonas amphiplana Wujek, 1986
• Paraphysomonas antarctica E. Takahashi, 1987
• Paraphysomonas bandaiensis E. Takahashi, 1976
• Paraphysomonas bourrellyi (E. Takahashi) Preisig & D.J. Hibberd, 1982 accepted as Spiniferomonas bourrellyi E. Takahashi
• Paraphysomonas butcheri C. Pennick & K.J. Clarke, 1972
• Paraphysomonas caelifrica H.R. Preisig & D.J. Hibberd, 1982
• Paraphysomonas campanulata Nicholls, 1984
• Paraphysomonas cancellata Preisig & D.J. Hibberd
• Paraphysomonas canistrum Preisig & D.J. Hibberd
• Paraphysomonas capreolata H.R. Preisig & D.J. Hibberd, 1982
• Paraphysomonas circumvallata Thomsen
• Paraphysomonas corbidifera Pennick & Clarke
• Paraphysomonas coronata Ø. Moestrup & B. Zimmermann in Thomsen et al., 1981
• Paraphysomonas corynephora Preisig & D.J. Hibberd, 1982
• Paraphysomonas cribosa I.A.N. Lucas, 1968
• Paraphysomonas cylicophora Leadbeater, 1972
• Paraphysomonas diademifera (Takahashi) Preisig & D.J. Hibberd
• Paraphysomonas eiffelii Thomsen
• Paraphysomonas erinacea I. Stefanová & T. Kalina, 1992
• Paraphysomonas faveolata A.J.J. Rees, G.F. Leedale & H.A. Cmiech, 1974
• Paraphysomonas foraminifera I.A.N. Lucas, 1967
• Paraphysomonas gladiata H.R. Preisig & D.J. Hibberd, 1982
• Paraphysomonas homolepis Preisig & D.J. Hibberd
• Paraphysomonas ignivoma Preisig & D.J. Hibberd
• Paraphysomonas imperforata I.A.N. Lucas, 1967
• Paraphysomonas inconspicua Takahashi, 1976
• Paraphysomonas manubriata (H.R. Preisig & D.J. Hibberd) N. Vørs
• Paraphysomonas morchella Preisig & D.J. Hibberd
• Paraphysomonas oligocycla Takahashi, 1987
• Paraphysomonas pileata I. Stefanová & T. Kalina, 1992
• Paraphysomonas planus D.E. Wujek & L.C. Saha, 1995
• Paraphysomonas porosa M. Dürrschmidt & G. Cronberg, 1989
• Paraphysomonas poteriophora Ø. Moestrup & J. Kristiansen, 1981
• Paraphysomonas punctata B. Zimmermann
• Paraphysomonas quadrispina Thomsen & Kristiansen
• Paraphysomonas runcinifera Preisig & D.J. Hibberd
• Paraphysomonas runciniferopsis D.E. Wujek & L.C. Saha, 1995
• Paraphysomonas sediculosa Nicholls, 1984
• Paraphysomonas sideriophora Thomsen
• Paraphysomonas sigillifera Moestrup
• Paraphysomonas stelligera Preisig & D.J. Hibberd
• Paraphysomonas stephanolepis Preisig & D.J. Hibberd
• Paraphysomonas subquadrangularis Preisig & D.J. Hibberd
• Paraphysomonas subrotacea Thomsen
• Paraphysomonas takahashii Cronberg & Kristiansen, 1980
• Paraphysomonas undulata Preisig & D.J. Hibberd
• Paraphysomonas vacuolata H.A. Thomsen, 1981 accepted as Polylepidomonas vacuolata (H.A. Thomsen) Preisig & D.J. Hibberd
• Paraphysomonas vestita (A.C. Stokes) De Saedleer, 1930